1. |
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Introduction |
Basic concepts in systems biology |
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Introduction |
Basic concepts in systems biology_ Biology in Time and space |
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2. |
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Modeling of Biochemical Systems |
Modeling approaches for biochemical systems |
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3. |
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Structural Modeling and Analysis of Biochemical Networks |
Metabolic network analysis: structure |
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Structural Modeling and Analysis of Biochemical Networks |
Metabolic network analysis: structure |
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4. |
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Structural Modeling and Analysis of Biochemical Networks |
Constraint-Based Model |
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Structural Modeling and Analysis of Biochemical Networks |
Constraint-Based Model, Example solving |
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5. |
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Structural Modeling and Analysis of Biochemical Networks |
Metabolic network analysis: simulation |
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Structural Modeling and Analysis of Biochemical Networks |
Types of Objective Function |
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6. |
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Structural Modeling and Analysis of Biochemical Networks |
Metabolic network analysis: simulation Example, MOMA |
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Structural Modeling and Analysis of Biochemical Networks |
Metabolic network analysis: simulation
Flux Variability Analysis, Strain optimization |
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7. |
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Metabolic Control Analysis |
Metabolic Control Theory, Sensitivity Analysis |
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Metabolic Control Analysis |
coefficients of MCA, Theorems of MCA |
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8. |
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Metabolic Control Analysis |
Distribution of Control, Connectivity Theorems - General Relations |
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Data Formats, Simulation Techniques, and Modeling Tools |
Modeling Tools: Kinetic Modeling software, standards and formats for systems biology |
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9. |
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Network Structures, Dynamics and Function |
Biological Netwerk Basic |
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10. |
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Network Structures, Dynamics and Function |
Properties of Real-work complex Networks |
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Network Structures, Dynamics and Function |
Summary of networks, Scale-free networks |
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11. |
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Network Structures, Dynamics and Function |
Modeling of gene Expression, Hill Equation |
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Network Structures, Dynamics and Function |
Properties of Regulatory Connections, Network Motifs in Transcription Network |
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12. |
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Network Structures, Dynamics and Function |
Network Motifs: Feed-Forward Loop |
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Network Structures, Dynamics and Function |
Network Motifs: Dense Overlapping Regulons(DOR) |
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